API for ImmuneDynamics/Spectre
High-dimensional cytometry and imaging analysis
| Global functions | |
|---|---|
| BatchAdjust | Source code |
| adjust.files | Man page Source code |
| barplot_scalingFactors | Source code |
| boxSummaryValsPrePost | Source code |
| call_plotAllAPrePost1ch | Source code |
| check.files | Man page Source code |
| copy_indexed_files | Source code |
| create.dt | Man page Source code |
| create.stats | Man page Source code |
| create.sumtable | Man page Source code |
| demo.clustered | Man page |
| do.add.cols | Man page Source code |
| do.add.masks | Man page Source code |
| do.add.percell | Man page Source code |
| do.aggregate | Man page Source code |
| do.align | Man page Source code |
| do.asinh | Man page Source code |
| do.calculate.area | Man page Source code |
| do.clip | Man page Source code |
| do.combine.cols | Man page Source code |
| do.create.outlines | Man page Source code |
| do.extract | Man page Source code |
| do.extract.cell.dat | Man page Source code |
| do.filter | Man page Source code |
| do.filter.percell | Man page Source code |
| do.label.from.polygon | Man page Source code |
| do.list.summary | Man page Source code |
| do.list.switch | Man page Source code |
| do.logicle | Man page Source code |
| do.merge.files | Man page Source code |
| do.pull.data | Man page Source code |
| do.reorder | Man page Source code |
| do.rescale | Man page Source code |
| do.stats | Man page Source code |
| do.subsample | Man page Source code |
| do.zscore | Man page Source code |
| fast.colour.plot | Man page Source code |
| fast.multi.plot | Man page Source code |
| fc_read | Source code |
| fftRtsne | Man page Source code |
| flipLT1 | Source code |
| get80thPercentile | Source code |
| getBatchNumFromFilename | Source code |
| getMinEventCount | Source code |
| getNZ | Source code |
| getScalingFactors | Source code |
| getValueMappings | Source code |
| get_bar_code_from_filename | Source code |
| get_ch_name | Source code |
| get_cols_to_norm | Source code |
| get_cols_to_norm_long_names | Source code |
| get_summaries_per_channel | Source code |
| listBatchesPresent | Source code |
| logToFile | Source code |
| ls_cmd | Source code |
| make.autograph | Man page Source code |
| make.colour.plot | Man page Source code |
| make.multi.plot | Man page Source code |
| make.pheatmap | Man page Source code |
| make.spatial.plot | Man page Source code |
| make.volcano.plot | Man page Source code |
| package.check | Man page Source code |
| package.install | Man page Source code |
| package.load | Man page Source code |
| parseP | Source code |
| permuteColsPrePost | Source code |
| plot1 | Source code |
| plotAllAPrePost1ch | Source code |
| prep.cytonorm | Man page Source code |
| read.files | Man page Source code |
| read.spatial.files | Man page Source code |
| run.align | Man page Source code |
| run.cytonorm | Man page Source code |
| run.fitsne | Man page Source code |
| run.flowsom | Man page Source code |
| run.harmony | Man page Source code |
| run.knn.classifier | Man page Source code |
| run.pca | Man page Source code |
| run.phenograph | Man page Source code |
| run.rpca | Man page Source code |
| run.ruv | Man page Source code |
| run.spatial.analysis | Man page Source code |
| run.tsne | Man page Source code |
| run.umap | Man page Source code |
| sortAnchorsByBatch | Source code |
| spatial | Man page |
| spatial-class | Man page |
| totalVar_allEvents | Source code |
| train.cytonorm | Man page Source code |
| train.knn.classifier | Man page Source code |
| varBarPlot | Source code |
| varDiffTotalPrePostT | Source code |
| write.files | Man page Source code |
| write.hdf5 | Man page Source code |
