make_data_object: Make data object

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Make data object

Description

This function creates the data object used in FRmatch. See an example of the data object in sce.example.

Usage

make_data_object(
  dat,
  tab,
  markers,
  cluster_marker_info = NULL,
  f_score = NULL,
  cluster_order = NULL
)

Arguments

dat	Cell-by-gene expression data in a data frame or equivalent format. The first column is cell names, followed by columns of each gene.
tab	Cluster membership of each cell in a data frame or equivalent format. The first column is cell names, and the second column is cluster labels.
markers	A vector of marker genes.
cluster_marker_info	Optionally, a data frame of maker genes for each cluster. marker is the unique set of marker genes for all clusters.
f_score	Optionally, a data frame of F-beta scores for each cluster.
cluster_order	Optionally, a vector of ordered cluster names, which may reflect the taxonomy of the cell type clusters.

Value

A data object of the SingleCellExperiment class

JCVenterInstitute/FRmatch documentation built on Dec. 15, 2022, 2:30 p.m.