plot_clusterSize: Cluster size plot

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Cluster size plot

Description

This function plots the cluster sizes of the two single cell datasets (e.g. query and reference) to be compared.

Usage

plot_clusterSize(
  sce.E1,
  sce.E2,
  decreasing = TRUE,
  name.E1 = "E1",
  name.E2 = "E2",
  col.E1 = "#F0E442",
  col.E2 = "#56B4E9",
  filename = NA,
  width = NULL,
  height = 10
)

Arguments

sce.E1, sce.E2	Data objects, namely E1 and E2.
decreasing	Boolean variable if the cluster sizes should be sorted in decreasing order. Default: TRUE.
name.E1, name.E2	Customized names for E1 and E2. Default: "E1" and "E2", respectively.
col.E1, col.E2	Customized colors for E1 and E2. Default: "#F0E442" and "#56B4E9", respectively.
filename	File name if to save the plot. Default: NA, not to save the plot.
width, height	Width and height for saved plot.

JCVenterInstitute/FRmatch documentation built on June 11, 2025, 12:28 a.m.