sce.example: Example data object

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Example data object

Description

This is an example of input data object for FRmatch. The data object is of the SingleCellExperiment class.

Usage

sce.example

Format

Please follow the naming convention and data formats of this example when constructing your own data object.

assays

Data assay logcounts is the gene-by-cell expression matrix.

rownames

Gene names.

rowData

Column marker_gene is a numeric vector indicating if a gene is a marker gene (1) or not (0).

colnames

Cell names.

colData

Column cluster_membership is a character vector of cell cluster membership.

metadata

List of 3.

• cluster_marker_info is a data frame of maker genes for each cluster.

• f_score is a data frame of F-beta scores for each cluster.

• cluster_order is a character vector of ordered cluster names.

See Also

The SingleCellExperiment class.

JCVenterInstitute/FRmatch documentation built on Dec. 15, 2022, 2:30 p.m.