View source: R/plot_bi_FRmatch.R
plot_bi_FRmatch | R Documentation |
This function combines and plots two sets of reciprocal FRmatch
results (i.e. experiment 1 (E1) query
to experiment 2 (E2) reference with E2 markers, and E2 query to E1 reference with E1 markers).
plot_bi_FRmatch( rst.FRmatch.E1toE2, rst.FRmatch.E2toE1, prefix = c("query.", "ref."), name.E1 = "E1.", name.E2 = "E2.", p.adj.method = "BY", sig.level = 0.05, reorder = TRUE, two.way.only = FALSE, return.value = FALSE, cellwidth = 10, cellheight = 10, main = NULL, filename = NA, ... )
rst.FRmatch.E1toE2, rst.FRmatch.E2toE1 |
The |
prefix |
Prefix names for query and reference clusters used in |
name.E1, name.E2 |
Customized names with delimiter for E1 and E2 to be used in this figure. Default: |
p.adj.method |
See |
sig.level |
See |
reorder |
See |
two.way.only |
Boolean variable indicating if to plot two-way matches only. Default: |
return.value |
Boolean variable indicating if to return the plotted values. Default: |
cellwidth, cellheight, main, filename, ... |
Plotting parameters passed to |
If return.value = TRUE
, a matrix of two-way matching values 2 = two-way match, 1 = one-way match, and 0 = no match.
plot_FRmatch
.
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