plot_exprDist: Gene expression data distribution plot

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Gene expression data distribution plot

Description

This function plots the expression data distributions of the two single cell datasets (e.g. query and reference) to be compared.

Usage

plot_exprDist(
  sce.E1,
  sce.E2,
  markers = NULL,
  name.E1 = "E1",
  name.E2 = "E2",
  breaks = 20,
  xlim = c(0, 10),
  ylim = c(0, 2),
  filename = NA,
  width = 10,
  height = 5,
  ...
)

Arguments

sce.E1, sce.E2	Data objects, namely E1 and E2.
name.E1, name.E2	Customized names for E1 and E2. Default: "E1" and "E2", respectively.
breaks, xlim, ylim	Plotting parameters passed to histogram plot.
filename	File name if to save the plot. Default: NA, not to save the plot.
width, height	Width and height for saved plot.
...	Additional arguments passed to hist

JCVenterInstitute/FRmatch documentation built on Dec. 15, 2022, 2:30 p.m.