normalization: Normalization function for FR-Match analysis

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Normalization function for FR-Match analysis

Description

Normalization function for FR-Match analysis

Usage

normalization(sce.object, scale = TRUE, norm.by = NULL)

Arguments

sce.object	Data object.
scale	Boolean variable indicating if to scale the per gene expression to the range [0,1]. Default: TRUE.
norm.by	If norm.by=NULL (default), do nothing. If norm.by="median", weight each gene by its median. If norm.by="mean", weight each gene by its mean. After normalization, all values are re-scale to [0,1] range.

Value

A data object with normalized expression data.

JCVenterInstitute/FRmatch documentation built on Dec. 15, 2022, 2:30 p.m.