plot_MST: Plot minimum spanning tree (MST)

In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match

Plot minimum spanning tree (MST)

Description

This function is a wrapper function for plotting MST of two interested clusters.

Usage

plot_MST(sce.query, sce.ref, query.cluster, ref.cluster, nsamp = 30, ...)

Arguments

sce.query, sce.ref	Query and reference data objects.
query.cluster, ref.cluster	Query and reference cluster names to plot.
nsamp	Number of randomly selected cells to plot for large cluster. Default: 30.
...	Additional arguments passed to FRtest.

Value

MST plot and FR-test result in console.

JCVenterInstitute/FRmatch documentation built on Dec. 15, 2022, 2:30 p.m.