plot_MST: Plot minimum spanning tree (MST)
In JCVenterInstitute/FRmatch: Cell type matching in single-cell RNA-sequencing data using FR-Match
plot_MST R Documentation
Plot minimum spanning tree (MST)
Description
This function is a wrapper function for plotting MST of two interested clusters.
Usage
plot_MST(sce.query, sce.ref, query.cluster, ref.cluster, nsamp = 30, ...)
Arguments
sce.query, sce.ref
Query and reference data objects.
query.cluster, ref.cluster
Query and reference cluster names to plot.
nsamp
Number of randomly selected cells to plot for large cluster. Default: 30.
...
Additional arguments passed to FRtest.
Value
MST plot and FR-test result in console.
JCVenterInstitute/FRmatch documentation built on June 11, 2025, 12:28 a.m.
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| plot_MST | R Documentation |
Plot minimum spanning tree (MST)
Description
This function is a wrapper function for plotting MST of two interested clusters.
Usage
plot_MST(sce.query, sce.ref, query.cluster, ref.cluster, nsamp = 30, ...)
Arguments
sce.query, sce.ref |
Query and reference data objects. |
query.cluster, ref.cluster |
Query and reference cluster names to plot. |
nsamp |
Number of randomly selected cells to plot for large cluster. Default: 30. |
... |
Additional arguments passed to |
Value
MST plot and FR-test result in console.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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