API for JEFworks/MERingue
Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with non-uniform cellular densities
| Global functions | |
|---|---|
| BCL | Man page |
| MERINGUE | Man page |
| areColors | Source code |
| bbox | Source code |
| bh.adjust | Source code |
| cleanCounts | Man page |
| drosophila | Man page |
| fac2col | Source code |
| filterSpatialPatterns | Man page Source code |
| getBnn | Man page Source code |
| getClusters | Man page |
| getCrossLayerNeighbors | Man page Source code |
| getDifferentialGenes | Man page Source code |
| getInterCellTypeWeight | Man page Source code |
| getKnn | Man page Source code |
| getMinPercentCells | Source code |
| getMnn | Man page Source code |
| getOverdispersedGenes | Man page Source code |
| getPv | Man page Source code |
| getSpatialNeighbors | Man page Source code |
| getSpatialPatterns | Man page Source code |
| getSpatialPatterns_C | Source code |
| getSpatiallyInformedClusters | Man page Source code |
| groupSigSpatialPatterns | Man page Source code |
| interCellTypeSpatialCrossCor | Man page Source code |
| interpolate | Man page Source code |
| lisaTest | Man page Source code |
| mOB | Man page |
| mPOA | Man page |
| makeApp | Man page Source code |
| map2col | Source code |
| moranPermutationTest | Man page Source code |
| moranSimple | Source code |
| moranTest | Man page |
| moranTest_C | Source code |
| moranTest_DEPRECATED | Man page |
| mouseCoronal | Man page |
| normalizeCounts | Man page |
| plotEmbedding | Man page Source code |
| plotInterCellTypeSpatialCrossCor | Man page Source code |
| plotNetwork | Man page Source code |
| plotNetwork3D | Man page Source code |
| purkinje | Man page |
| receptorLigandInfo | Man page |
| rotatePos | Man page Source code |
| rtorShift | Source code |
| shift | Source code |
| signedLisa | Man page Source code |
| signedLisaPlot | Man page Source code |
| spatialCrossCor | Man page Source code |
| spatialCrossCorMatrix | Man page Source code |
| spatialCrossCorMatrix_C | Source code |
| spatialCrossCorTest | Man page Source code |
| spatialCrossCorTorTest | Man page Source code |
| spatialCrossCor_C | Source code |
| torShift | Source code |
| unitize_C | Source code |
| winsorize | Man page |
