API for Japrin/scPip
pipeline for scRNA-seq data analysis
| Global functions | |
|---|---|
| .onLoad | Source code |
| HVG.From.GeneRankTb | Man page Source code |
| cal.signatureScore.gdT.Fred | Man page Source code |
| calEffectSizeFromDE | Man page Source code |
| calProliferationScore | Man page Source code |
| changeSomeNames | Source code |
| convertLimmaToSCE | Man page Source code |
| dataOnRDPlot | Source code |
| fill.contamination | Man page Source code |
| g.geneOnUmap.list | Man page |
| gset.list | Man page |
| inSilico.TCell | Man page Source code |
| inSilico.TGammaDelta | Man page Source code |
| make.geneTableLong | Man page Source code |
| makeGeneOnTSNEPlot | Source code |
| makeViolinPlot | Source code |
| mergeDataFromFileTable | Man page Source code |
| mergeSCEDataFromFileTable | Man page Source code |
| render_KnitReport | Man page Source code |
| resetSig | Man page Source code |
| run.HVG | Man page Source code |
| run.Leiden | Man page Source code |
| run.Scanorama | Man page Source code |
| run.Seurat3 | Man page Source code |
| run.inte.metaClust | Man page Source code |
| run.rapids_singlecell | Man page Source code |
| run.scanpy | Man page Source code |
| saveSCEPerDataSet | Source code |
| sigGeneHeatmap | Man page Source code |
