sigGeneHeatmap: make heatmap for top signature genes

In Japrin/scPip: pipeline for scRNA-seq data analysis

make heatmap for top signature genes

Description

make heatmap for top signature genes

Usage

sigGeneHeatmap(
  out.prefix,
  gene.desc.top,
  sce.pb,
  gene.to.show.tb,
  value.var = "comb.ES",
  colSet = list(),
  ...
)

Arguments

out.prefix	character; output prefix
gene.desc.top	data.table; gene info table
sce.pb	object of SingleCellExperiment; gene by meta-cluster values stored in this object
gene.to.show.tb	data.table; infomation of genes to be shown
value.var	character; stored value to use. (default: "comb.ES")
colSet	list; color set to use. (default: list())
...	; parameters passed to sscVis::plotMatrix.simple

Japrin/scPip documentation built on Jan. 29, 2024, 1:20 a.m.