Files in Japrin/scPip
pipeline for scRNA-seq data analysis
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/sc.intClust.R
R/sc.utils.R
R/zzz.R
README.md
appveyor.yml
data/cc.genes.mouse.rda
data/gset.list.rda
inst/extdata/ISG.MSigDB.BROWNE_INTERFERON_RESPONSIVE_GENES.detected.glist.gz
inst/extdata/byDE.cellCycle.hc.glist.gz
inst/extdata/byZhangLab.stress.glist.gz
inst/extdata/exclude.gene.misc.human.v3.RData
inst/extdata/exclude.gene.misc.human.v4.RData
inst/extdata/exclude.gene.misc.mouse.v3.RData
inst/extdata/exclude.gene.misc.mouse.v4.RData
inst/script/aln.STAR.sh
inst/script/example/w.run.M.sh
inst/script/example/w.run.T.sh
inst/script/make.CC.R
inst/script/report.template.sc.rmd
inst/script/run.MQuad.sh
inst/script/run.cellRanger.count.sh
inst/script/run.copykat.R
inst/script/run.pyScenic.sh
inst/script/run.scanpy.basic.R
inst/script/run.seurat3.basic.R
inst/script/wrapper.convertLimmaToSCE.R
inst/script/wrapper.run.inte.R
inst/script/wrapper.run.limma.R
inst/script/wrapper.vireoSNP.py
man/HVG.From.GeneRankTb.Rd
man/cal.signatureScore.gdT.Fred.Rd
man/calEffectSizeFromDE.Rd
man/calProliferationScore.Rd
man/convertLimmaToSCE.Rd
man/fill.contamination.Rd
man/g.geneOnUmap.list.Rd
man/gset.list.Rd
man/inSilico.TCell.Rd
man/inSilico.TGammaDelta.Rd
man/make.geneTableLong.Rd
man/mergeDataFromFileTable.Rd
man/mergeSCEDataFromFileTable.Rd
man/render_KnitReport.Rd
man/resetSig.Rd
man/run.HVG.Rd
man/run.Leiden.Rd
man/run.Scanorama.Rd
man/run.Seurat3.Rd
man/run.inte.metaClust.Rd
man/run.scanpy.Rd
man/sigGeneHeatmap.Rd
