calEffectSizeFromDE: calculate effect size given a de.out object

In Japrin/scPip: pipeline for scRNA-seq data analysis

calculate effect size given a de.out object

Description

calculate effect size given a de.out object

Usage

calEffectSizeFromDE(de.out, de.mode = "multiAsTwo", ncores = 8, cal.p = F)

Arguments

de.out	list; Three components are required: two data.table named "all" and "sig", a list named "fit"
de.mode	character; mode of differential expression analysis. (default: "multiAsTwo")
ncores	integer; number of CPU cores to use. (default: 8)
cal.p	logical; whether to calculate p-values assuming normal distribution on the z-scores (default: F)

Details

calculate effect size given a de.out object

Value

a list contain components, "es.tb" (data.table), "ncells.vec" and "ncells.control.vec" (integer vectors)

Japrin/scPip documentation built on Jan. 29, 2024, 1:20 a.m.