run.HVG: Wraper for highly variable genes finding
In Japrin/scPip: pipeline for scRNA-seq data analysis
run.HVG R Documentation
Wraper for highly variable genes finding
Description
Wraper for highly variable genes finding
Usage
run.HVG(seu, gene.exclude.df, n.top = 1500, measurement = "counts")
Arguments
seu
object of Seurat
gene.exclude.df
data.frame; gene blak list. Required column: seu.id.
n.top
integer; number of top genes. (default: 1500)
measurement
character; "counts", "TPM" or "cpm". (default: "counts")
Value
a Seurat object
Japrin/scPip documentation built on April 14, 2025, 10:32 a.m.
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| run.HVG | R Documentation |
Wraper for highly variable genes finding
Description
Wraper for highly variable genes finding
Usage
run.HVG(seu, gene.exclude.df, n.top = 1500, measurement = "counts")
Arguments
seu |
object of |
gene.exclude.df |
data.frame; gene blak list. Required column: seu.id. |
n.top |
integer; number of top genes. (default: 1500) |
measurement |
character; "counts", "TPM" or "cpm". (default: "counts") |
Value
a Seurat object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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