HVG.From.GeneRankTb: highly variable genes finding (method using percetile rank...

In Japrin/scPip: pipeline for scRNA-seq data analysis

highly variable genes finding (method using percetile rank values from F test)

Description

highly variable genes finding (method using percetile rank values from F test)

Usage

HVG.From.GeneRankTb(
  gene.rank.tb,
  n.common = 1000,
  n.specific = 1000,
  th.rank = 0.1
)

Arguments

gene.rank.tb	data.table object
n.common	integer; number of common top genes. (default: 1000)
n.specific	integer; number of top genes with high dataset-specificities. (default: 1000)
th.rank	double; threshold for rank. (default: 0.1)

Details

For specific genes, the top n.specific genes with percetile rank values < th.rank are selected.

Value

a data.table object

Japrin/scPip documentation built on Jan. 29, 2024, 1:20 a.m.