inSilico.TGammaDelta | R Documentation |
Identification of gamma delta T cells (simple average-threshold method)
inSilico.TGammaDelta(
obj,
out.prefix = NULL,
assay.name = "norm_exprs",
vis.v = c(0.25, 0.5),
Th.CD3 = 0.25,
Th.DC = 0.25,
Th.GC1 = 0.25,
Th.GC2 = 0.25
)
obj |
object of |
out.prefix |
character; output prefix. (default: NULL) |
assay.name |
character vector; which assay to use. (default: "norm_exprs"). |
vis.v |
double vector; for vertical lines in visulization. (default: c(0.25,0.5)). |
Th.CD3 |
double; threshold for T cell signature. (default: 0.25) |
Th.DC |
double; threshold for delta receptor constant chain. (default: 0.25) |
Th.GC1 |
double; threshold for gamma receptor constant chain 1. (default: 0.25) |
Th.GC2 |
double; threshold for gamma receptor constant chain 2. (default: 0.25) |
a SingleCellExperiment object
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