run.Leiden: wrapper for running leiden clustering
In Japrin/scPip: pipeline for scRNA-seq data analysis
run.Leiden R Documentation
wrapper for running leiden clustering
Description
wrapper for running leiden clustering
Usage
run.Leiden(dat.pca, SNN.k = 20, myseed = 123456, ...)
Arguments
dat.pca
data.frame; row for sample, column for variable
SNN.k
integer; parameter k of scran::buildSNNGraph. (default: 20)
myseed
integer; seed for random number generation. (default: 123456)
...
; other parameters passed to leiden::leiden
Details
implementation in Seurat (FindClusters) can only detect singletons :-(
Value
a object returned from leiden::leiden
Japrin/scPip documentation built on Jan. 29, 2024, 1:20 a.m.
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| run.Leiden | R Documentation |
wrapper for running leiden clustering
Description
wrapper for running leiden clustering
Usage
run.Leiden(dat.pca, SNN.k = 20, myseed = 123456, ...)
Arguments
dat.pca |
data.frame; row for sample, column for variable |
SNN.k |
integer; parameter k of scran::buildSNNGraph. (default: 20) |
myseed |
integer; seed for random number generation. (default: 123456) |
... |
; other parameters passed to leiden::leiden |
Details
implementation in Seurat (FindClusters) can only detect singletons :-(
Value
a object returned from leiden::leiden
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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