calProliferationScore: calculate the proliferation score

In Japrin/scPip: pipeline for scRNA-seq data analysis

calculate the proliferation score

Description

calculate the proliferation score

Usage

calProliferationScore(
  obj,
  gene.prol,
  assay.name = "norm_exprs",
  out.prefix = NULL,
  method = "mean"
)

Arguments

obj	object of SingleCellExperiment
gene.prol	character vector; genes to use.
assay.name	character vector; which assay to use. (default: "norm_exprs").
out.prefix	character; output prefix. (default: NULL)
method	character; method to use. (default: "mean").

Details

calculate the proliferation score.

Value

a list

Japrin/scPip documentation built on Jan. 29, 2024, 1:20 a.m.