mergeImputeData: Merge chunk-wise PLINK files

In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline

Description

Merge all chunk-wise PLINK files into chromosome-wise PLINK files then assemble into one PLINK file set. Create a file containing a list chunk ped and map file names. At last, combine all chrs (combine the first 23 chrs; then Xpar).

Usage

mergeImputeData(plink, chrs, prefix4plinkEachChr, prefix4imputedPlink, nCore)

Arguments

plink	an executable PLINK program in either the current working directory or somewhere in the command path.
chrs	specifiy the chromosomes to be merged.
prefix4plinkEachChr	the prefix of the input chunk-wise IMPUTE2 files.
prefix4imputedPlink	the prefix of the final imputed PLINK format files.
nCore	the number of cores used for computation.

Value

The merged PLINK format files.

Author(s)

Junfang Chen <[e-mail]>

Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.