removedSnpHWEautoControl: Hardy weinberg equilibrium test for autosomal SNPs in...
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Remove autosomal SNPs in controls.
Usage
1
2
removedSnpHWEautoControl(plink, inputPrefix, pval, outputFile_pVal,
outputSNPfile, outputPrefix)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
inputPrefix
the prefix of the input PLINK format files.
pval
the p-value cutoff for controlling HWE test in control subjects. Only autosomal SNPs are tested here.
outputFile_pVal
the output pure text file that stores autosomal SNPs and their sorted HWE p-values.
outputSNPfile
the output pure text file that stores the removed SNPs.
outputPrefix
the prefix of the output PLINK format files.
Value
The output PLINK format files.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
Remove autosomal SNPs in controls.
Usage
1 2 | removedSnpHWEautoControl(plink, inputPrefix, pval, outputFile_pVal,
outputSNPfile, outputPrefix)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
inputPrefix |
the prefix of the input PLINK format files. |
pval |
the p-value cutoff for controlling HWE test in control subjects. Only autosomal SNPs are tested here. |
outputFile_pVal |
the output pure text file that stores autosomal SNPs and their sorted HWE p-values. |
outputSNPfile |
the output pure text file that stores the removed SNPs. |
outputPrefix |
the prefix of the output PLINK format files. |
Value
The output PLINK format files.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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