removeNoGroupId: Remove samples without group information

Description Usage Arguments Value Author(s)

Description

Remove samples without group/outcome/phenotype information, which is coded as -9 in PLINK .fam file.

Usage

1
removeNoGroupId(plink, inputPrefix, outputPrefix)

Arguments

plink

an executable PLINK program in either the current working directory or somewhere in the command path.

inputPrefix

the prefix of the input PLINK format files.

outputPrefix

the prefix of the output PLINK format files.

metaDataFile

a pure text file that stores the meta information of the samples.

Value

The output PLINK format files after removing samples without group information/IDs.

Author(s)

Junfang Chen <junfang.chen3@gmail.com>


Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.