removedInstFhet: Remove subjects with great autosomal heterozygosity deviation
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Remove instances with great autosomal heterozygosity deviation. i.e. with |Fhet| >= 0.2.
This analysis will automatically skip haploid markers (male X and Y chromosome markers).
Usage
1
removedInstFhet(plink, Fhet, inputPrefix, outputPrefix)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
Fhet
the cutoff of the autosomal heterozygosity deviation.
inputPrefix
the prefix of the input PLINK format files.
outputPrefix
the prefix of the output PLINK format files.
Value
The output PLINK format files after removing subjects with great autosomal heterozygosity deviation.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
Remove instances with great autosomal heterozygosity deviation. i.e. with |Fhet| >= 0.2. This analysis will automatically skip haploid markers (male X and Y chromosome markers).
Usage
1 | removedInstFhet(plink, Fhet, inputPrefix, outputPrefix)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
Fhet |
the cutoff of the autosomal heterozygosity deviation. |
inputPrefix |
the prefix of the input PLINK format files. |
outputPrefix |
the prefix of the output PLINK format files. |
Value
The output PLINK format files after removing subjects with great autosomal heterozygosity deviation.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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