removedMonoSnp: Remove monomorphic SNPs
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Remove monomorphic SNPs after QC and alignment to the imputation reference.
Usage
1
removedMonoSnp(plink, inputPrefix, outputPrefix, outputSNPs)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
inputPrefix
the prefix of the input plink files.
outputPrefix
the prefix of the output plink files (after removing monomorphic SNPs).
outputSNPs
the output pure text file that stores the removed monomorphic SNPs.
Value
The output plink files (after removing monomorphic SNPs) and a pure text file with removed monomorphic SNPs.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
Remove monomorphic SNPs after QC and alignment to the imputation reference.
Usage
1 | removedMonoSnp(plink, inputPrefix, outputPrefix, outputSNPs)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
inputPrefix |
the prefix of the input plink files. |
outputPrefix |
the prefix of the output plink files (after removing monomorphic SNPs). |
outputSNPs |
the output pure text file that stores the removed monomorphic SNPs. |
Value
The output plink files (after removing monomorphic SNPs) and a pure text file with removed monomorphic SNPs.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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