removedWrongAnceInst: Remove samples with improper ancestry
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Remove samples with improper ancestry or keep samples with your own purpose.
Usage
1
2
removedWrongAnceInst(plink, inputPrefix, metaDataFile, ancestrySymbol,
outputPrefix)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
inputPrefix
the prefix of the input PLINK format files.
metaDataFile
a pure text file that stores the meta information of the samples.
ancestrySymbol
an indicator that shows the symbol of targeted ancestry. Such as 'EA' stands for the European, 'AA' for African American.
If it is null, then all samples are selected.
outputPrefix
the prefix of the output PLINK format files.
Value
The output PLINK format files after ancestry check.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
Remove samples with improper ancestry or keep samples with your own purpose.
Usage
1 2 | removedWrongAnceInst(plink, inputPrefix, metaDataFile, ancestrySymbol,
outputPrefix)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
inputPrefix |
the prefix of the input PLINK format files. |
metaDataFile |
a pure text file that stores the meta information of the samples. |
ancestrySymbol |
an indicator that shows the symbol of targeted ancestry. Such as 'EA' stands for the European, 'AA' for African American. If it is null, then all samples are selected. |
outputPrefix |
the prefix of the output PLINK format files. |
Value
The output PLINK format files after ancestry check.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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