removeDupID: Remove duplicated sample IDs

Description Usage Arguments Value Author(s)

Description

Remove duplicated sample IDs, which should be defined in advance. For instance, one can define these duplicated sample IDs in the configuration folder.

Usage

1
removeDupID(plink, dupSampleIDFile, inputPrefix, outputPrefix)

Arguments

plink

an executable PLINK program in either the current working directory or somewhere in the command path.

dupSampleIDFile

a pure text file that stores the duplicated sample IDs, which should be removed. If it is null, then copy and paste the input PLINK files from the last step.

inputPrefix

the prefix of the input PLINK format files.

outputPrefix

the prefix of the output PLINK format files.

Value

The output PLINK format files after removing duplicated sample IDs.

Author(s)

Junfang Chen <junfang.chen3@gmail.com>


Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.