removedSnpMiss: Remove SNPs with missing values
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
Remove SNPs with missingness of greater than a certain threshold before/after removing subjects.
Usage
1
removedSnpMiss(plink, snpMissCutOff, inputPrefix, outputPrefix)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
snpMissCutOff
the cutoff of the missingness for removing SNPs.
inputPrefix
the prefix of the input PLINK format files.
outputPrefix
the prefix of the output PLINK format files.
Value
The output PLINK format files after removing SNPs with pre-defined missing values.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
Remove SNPs with missingness of greater than a certain threshold before/after removing subjects.
Usage
1 | removedSnpMiss(plink, snpMissCutOff, inputPrefix, outputPrefix)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
snpMissCutOff |
the cutoff of the missingness for removing SNPs. |
inputPrefix |
the prefix of the input PLINK format files. |
outputPrefix |
the prefix of the output PLINK format files. |
Value
The output PLINK format files after removing SNPs with pre-defined missing values.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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