removedSnpFemaleChrXmiss: remove chromosome X SNPs in females
In Junfang/Gimpute: Gimpute: An efficient genetic data processing and imputation pipeline
Description
Usage
Arguments
Value
Author(s)
Description
#.Remove chrX SNPs with a pre-defined cutoff for missingness in females.
Usage
1
removedSnpFemaleChrXmiss(plink, femaleChrXmissCutoff, inputPrefix, outputPrefix)
Arguments
plink
an executable PLINK program in either the current working directory or somewhere in the command path.
femaleChrXmissCutoff
the cutoff of the missingness in female chromosome X SNPs.
inputPrefix
the prefix of the input PLINK format files.
outputPrefix
the prefix of the output PLINK format files.
Value
The output PLINK format files.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
Junfang/Gimpute documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value Author(s)
Description
#.Remove chrX SNPs with a pre-defined cutoff for missingness in females.
Usage
1 | removedSnpFemaleChrXmiss(plink, femaleChrXmissCutoff, inputPrefix, outputPrefix)
|
Arguments
plink |
an executable PLINK program in either the current working directory or somewhere in the command path. |
femaleChrXmissCutoff |
the cutoff of the missingness in female chromosome X SNPs. |
inputPrefix |
the prefix of the input PLINK format files. |
outputPrefix |
the prefix of the output PLINK format files. |
Value
The output PLINK format files.
Author(s)
Junfang Chen <junfang.chen3@gmail.com>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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