SJTrack: Create a track of linear splice junction
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
View source: R/plot_functions.r
Description
Function to create a CustomTrack of linear splice junctions for plotting using Gviz.
Usage
1
Arguments
sj
Data on linear splice sites. Should be a GRanges object returned by readSJout. Ideally, the data should be restricted to the genomic reange of a single gene (e.g. GenomicFeatures::subsetByOverlaps(sj, region.of.intereset, type = "within")).
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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View source: R/plot_functions.r
Description
Function to create a CustomTrack of linear splice junctions for plotting using Gviz.
Usage
1 |
Arguments
sj |
Data on linear splice sites. Should be a GRanges object returned by readSJout. Ideally, the data should be restricted to the genomic reange of a single gene (e.g. GenomicFeatures::subsetByOverlaps(sj, region.of.intereset, type = "within")). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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