inferExons: Infer the exons structure of a circular RNA
In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data
Description
Usage
Arguments
Value
Description
The genomic region covered by a backsplice junction is used to identify overlapping transcript models
and subsequently, whether the nucleotides adjacent to the donor and acceptor positions overlap with known exon boundaries.
If both positions overlap with known exon termini, the resulting exon structure is returned. Otherwise, NULL is returned.
Usage
1
inferExons(bsid, eBt)
Arguments
bsid
A valid backsplice ID
eBt
A GRangesList of exons-by-transcript, generated using the exonsBy-function.
Value
GRanges object or list of GRanges obejcts giving the inferred exon structure of a circRNA identified by the supplied backsplice ID.
KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.
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Description Usage Arguments Value
Description
The genomic region covered by a backsplice junction is used to identify overlapping transcript models and subsequently, whether the nucleotides adjacent to the donor and acceptor positions overlap with known exon boundaries. If both positions overlap with known exon termini, the resulting exon structure is returned. Otherwise, NULL is returned.
Usage
1 | inferExons(bsid, eBt)
|
Arguments
bsid |
A valid backsplice ID |
eBt |
A GRangesList of exons-by-transcript, generated using the exonsBy-function. |
Value
GRanges object or list of GRanges obejcts giving the inferred exon structure of a circRNA identified by the supplied backsplice ID.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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