vizJunctions: Visualize the linear and backsplice junction of a specific...

In KasperThystrup/circulaR: Characterization of circRNAs from Total RNA-seq data

Description

Visualize the linear and backsplice junction of a specific gene or genomic region in a specific sample.

Usage

vizJunctions(
  object,
  symbol = NULL,
  range = NULL,
  db,
  xlim = NULL,
  onlyJunctionsWithinRange = FALSE,
  validExonModels = NULL,
  deducedCoverage = NULL,
  chromosomes = TRUE,
  path = NULL,
  prefix = NULL,
  device = "png",
  cores = 1L,
  ...
)

Arguments

object	circSample
symbol	Character vector of length 1 with the symbol (genename) of the gene to plot.
sampleIndex	Relevant if we should support circExperiment. Numeric value corresponding to the sample to plot.
sampleName	Relevant if we should support circExperiment. Name of the sample to plot.
r	GenomicRange corresponding to the region to plot.

Value

A plot

Examples

#vizJunctions(testSample, symbol = "FIRRE")

KasperThystrup/circulaR documentation built on March 14, 2021, 12:44 p.m.