API for LEEF-UZH/LEEF.analysis
Access Functions, Tests and Basic Analysis of the RRD Data from the LEEF Project
| Global functions | |
|---|---|
| CalculateDensities | Man page Source code |
| LEEF.analysis | Man page |
| LEEF.analysis-package | Man page |
| LEEF_1_biomass_bemovi_16 | Man page Source code |
| LEEF_1_biomass_bemovi_25 | Man page Source code |
| LEEF_1_biomass_bemovi_25_cropped | Man page Source code |
| LEEF_1_biomass_bemovi_25_non_cropped | Man page Source code |
| LEEF_1_biomass_flowcam | Man page Source code |
| LEEF_1_biomass_flowcytometer | Man page Source code |
| LEEF_2_add_experiment_tables | Man page Source code |
| LEEF_2_biomass_bemovi | Man page Source code |
| LEEF_2_biomass_flowcam | Man page Source code |
| LEEF_2_classify_bemovi_archive | Man page Source code |
| LEEF_2_classify_bemovi_files | Man page Source code |
| LEEF_2_classify_flowcam_archive | Man page Source code |
| LEEF_2_classify_flowcam_files | Man page Source code |
| LEEF_2_density_flowcytometer_archive | Man page Source code |
| LEEF_2_extract_traits_flowcytometer_archive | Man page Source code |
| LEEF_2_make_view_density | Man page Source code |
| LEEF_2_make_view_o2 | Man page Source code |
| LEEF_2_make_view_toc | Man page Source code |
| LEEF_2_plot_bottles_per_timestamp | Man page Source code |
| LEEF_2_plot_conductivity_per_bottle_per_timestamp | Man page Source code |
| LEEF_2_plot_density_species_per_bottle_per_timestamp | Man page Source code |
| LEEF_2_plot_flowcytometer_individual_per_bottle_per_timestamp | Man page Source code |
| LEEF_2_plot_o2s_per_bottle_per_timestamp | Man page Source code |
| LEEF_2_plot_response_incubator | Man page Source code |
| LEEF_2_plot_tocs_per_bottle_per_timestamp | Man page Source code |
| LEEF_2_rename_composition | Man page Source code |
| LEEF_2_rename_species | Man page Source code |
| LEEF_2_rename_species_prob_columns | Man page Source code |
| LEEF_2_rename_toc | Man page Source code |
| LEEF_2_report_diagnostic | Man page Source code |
| RRD_LEEF_1_rename | Man page Source code |
| RRD_create_indices | Man page Source code |
| RRD_new | Man page Source code |
| SetNotFoundSpeciesTo0 | Man page Source code |
| add_experiment_tables | Man page Source code |
| add_extracted_csv_to_db | Man page Source code |
| add_reclassified_to_db | Man page Source code |
| add_to_db | Man page Source code |
| arrow_read_conductivity | Man page Source code |
| arrow_read_density | Man page Source code |
| arrow_read_o2 | Man page Source code |
| arrow_read_table | Man page Source code |
| arrow_read_toc | Man page Source code |
| classify_bemovi_archive | Man page Source code |
| classify_bemovi_files | Man page Source code |
| classify_flowcam_archive | Man page Source code |
| classify_flowcam_files | Man page Source code |
| configs | Man page Source code |
| convert_timestamp | Source code |
| create_rrd_trimmed | Man page Source code |
| db_disconnect | Man page Source code |
| db_read_conductivity | Man page Source code |
| db_read_density | Man page Source code |
| db_read_immigration | Man page Source code |
| db_read_light_decline | Man page Source code |
| db_read_o2 | Man page Source code |
| db_read_stressor_levels | Man page Source code |
| db_read_table | Man page Source code |
| db_read_toc | Man page Source code |
| density_flowcytometer_archive | Man page Source code |
| extract_timestamps | Man page Source code |
| extract_traits_flowcytometer_archive | Man page Source code |
| fix_bottle | Source code |
| generate_overlays | Man page Source code |
| get_column_info | Source code |
| get_db_metadata | Source code |
| get_mimema | Source code |
| get_table_metadata | Source code |
| get_table_pragma | Source code |
| get_values | Source code |
| make_view_conductivity | Man page Source code |
| make_view_density | Man page Source code |
| make_view_immigration_event | Man page Source code |
| make_view_light_decline | Man page Source code |
| make_view_o2 | Man page Source code |
| make_view_toc | Man page Source code |
| make_views | Man page Source code |
| object_to_parquet | Man page Source code |
| overlays | Man page Source code |
| overlays_from_folders | Man page Source code |
| overlays_from_reclassification | Man page Source code |
| parquet_add_bemovi_16 | Man page Source code |
| parquet_add_bemovi_25 | Man page Source code |
| parquet_add_bemovi_25_cropped | Man page Source code |
| parquet_add_conductivity | Man page Source code |
| parquet_add_flowcam | Man page Source code |
| parquet_add_flowcytometer | Man page Source code |
| parquet_add_manualcount | Man page Source code |
| parquet_add_o2 | Man page Source code |
| parquet_add_toc | Man page Source code |
| plot_bottles_per_timestamp | Man page Source code |
| plot_density_species_per_bottle_per_timestamp | Man page Source code |
| plot_no_species_per_bottle_per_timestamp | Man page Source code |
| plot_o2s_per_bottle_per_timestamp | Man page Source code |
| plot_response_incubator | Man page Source code |
| plot_species_per_timestamp_per_measure | Man page Source code |
| plot_tocs_per_bottle_per_timestamp | Man page Source code |
| prepare_rrd | Man page Source code |
| read_sql | Man page Source code |
| render_quarto_temp | Man page Source code |
| report_diagnostic | Man page Source code |
| report_flowcytometer | Man page Source code |
| report_interactive | Man page Source code |
| report_reclassification | Man page Source code |
| report_sanity_check | Man page Source code |
| sanity_check | Man page Source code |
| sanity_check_bemovi.mag.16 | Man page Source code |
| sanity_check_bemovi.mag.25 | Man page Source code |
| sanity_check_flowcam | Man page Source code |
| sanity_check_flowcytometer | Man page Source code |
| sanity_check_general.data | Man page Source code |
| sanity_check_manualcount | Man page Source code |
| sanity_check_o2meter | Man page Source code |
| sanity_get_timestamp | Man page Source code |
| sort_measurements | Source code |
| species_set | Man page Source code |
| traits_flowcytometer_archive | Man page Source code |
