LuyiTian/scPipe: Pipeline for single cell multi-omic data pre-processing
A preprocessing pipeline for single cell RNA-seq/ATAC-seq data that starts from the fastq files and produces a feature count matrix with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DataImport GeneExpression GenomeAnnotation ImmunoOncology Preprocessing QualityControl RNASeq SequenceMatching Sequencing SingleCell Software Visualization |
| Maintainer | |
| License | GPL (>= 2) |
| Version | 1.99.2 |
| URL | https://github.com/LuyiTian/scPipe |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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