create_pval_index_from_vcf: Create pval index from GWAS-VCF file
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
create_pval_index_from_vcf R Documentation
Create pval index from GWAS-VCF file
Description
Create a separate file called <id>.pvali which is used to speed up p-value queries.
Usage
create_pval_index_from_vcf(vcffile, maximum_pval, indexname)
Arguments
vcffile
VCF filename
maximum_pval
Maximum p-value to include. Default = 0.05
indexname
index file name to create. Deletes existing file if exists.
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| create_pval_index_from_vcf | R Documentation |
Create pval index from GWAS-VCF file
Description
Create a separate file called <id>.pvali which is used to speed up p-value queries.
Usage
create_pval_index_from_vcf(vcffile, maximum_pval, indexname)
Arguments
vcffile |
VCF filename |
maximum_pval |
Maximum p-value to include. Default = 0.05 |
indexname |
index file name to create. Deletes existing file if exists. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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