get_ld_proxies: Find LD proxies for a set of SNPs
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
get_ld_proxies R Documentation
Find LD proxies for a set of SNPs
Description
Find LD proxies for a set of SNPs
Usage
get_ld_proxies(
rsid,
bfile,
searchspace = NULL,
tag_kb = 5000,
tag_nsnp = 5000,
tag_r2 = 0.6,
threads = 1,
out = tempfile()
)
Arguments
rsid
list of rs IDs
bfile
ld reference panel
searchspace
Optional list of rs IDs to use as potential proxies
tag_kb
=5000 Proxy parameter
tag_nsnp
=5000 Proxy parameter
tag_r2
=0.6 Proxy parameter
threads
Number of threads to use (=1)
out
temporary output file
Value
data frame
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| get_ld_proxies | R Documentation |
Find LD proxies for a set of SNPs
Description
Find LD proxies for a set of SNPs
Usage
get_ld_proxies(
rsid,
bfile,
searchspace = NULL,
tag_kb = 5000,
tag_nsnp = 5000,
tag_r2 = 0.6,
threads = 1,
out = tempfile()
)
Arguments
rsid |
list of rs IDs |
bfile |
ld reference panel |
searchspace |
Optional list of rs IDs to use as potential proxies |
tag_kb |
=5000 Proxy parameter |
tag_nsnp |
=5000 Proxy parameter |
tag_r2 |
=0.6 Proxy parameter |
threads |
Number of threads to use (=1) |
out |
temporary output file |
Value
data frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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