query_chrompos_file: Query vcf file, extracting by chromosome and position
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
query_chrompos_file R Documentation
Query vcf file, extracting by chromosome and position
Description
Query vcf file, extracting by chromosome and position
Usage
query_chrompos_file(chrompos, vcffile, id = NULL, build = "GRCh37")
Arguments
chrompos
Either vector of chromosome and position ranges e.g. "1:1000" or "1:1000-2000", or data frame with columns chrom, start, end.
vcffile
Path to .vcf.gz GWAS summary data file
id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter
build
Default="GRCh37" Build of vcffile
Value
VCF object
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| query_chrompos_file | R Documentation |
Query vcf file, extracting by chromosome and position
Description
Query vcf file, extracting by chromosome and position
Usage
query_chrompos_file(chrompos, vcffile, id = NULL, build = "GRCh37")
Arguments
chrompos |
Either vector of chromosome and position ranges e.g. "1:1000" or "1:1000-2000", or data frame with columns |
vcffile |
Path to .vcf.gz GWAS summary data file |
id |
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter |
build |
Default="GRCh37" Build of vcffile |
Value
VCF object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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