query_pval_file: Query pval from vcf file
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
query_pval_file R Documentation
Query pval from vcf file
Description
Query pval from vcf file
Usage
query_pval_file(pval, vcffile, id = NULL, build = "GRCh37")
Arguments
pval
P-value threshold (NOT -log10)
vcffile
Path to tabix indexed vcf file
id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter
build
Default="GRCh37"
Value
VCF object
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| query_pval_file | R Documentation |
Query pval from vcf file
Description
Query pval from vcf file
Usage
query_pval_file(pval, vcffile, id = NULL, build = "GRCh37")
Arguments
pval |
P-value threshold (NOT -log10) |
vcffile |
Path to tabix indexed vcf file |
id |
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter |
build |
Default="GRCh37" |
Value
VCF object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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