query_rsid_rsidx: Query rsid from file using rsidx index
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
query_rsid_rsidx R Documentation
Query rsid from file using rsidx index
Description
See create_rsidx_index
Usage
query_rsid_rsidx(rsid, vcffile, id = NULL, rsidx)
Arguments
rsid
Vector of rsids
vcffile
Path to .vcf.gz GWAS summary data file
id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter
rsidx
Path to rsidx index file
Value
vcf object
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| query_rsid_rsidx | R Documentation |
Query rsid from file using rsidx index
Description
See create_rsidx_index
Usage
query_rsid_rsidx(rsid, vcffile, id = NULL, rsidx)
Arguments
rsid |
Vector of rsids |
vcffile |
Path to .vcf.gz GWAS summary data file |
id |
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter |
rsidx |
Path to rsidx index file |
Value
vcf object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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