query_pval_sqlite3: Query pval from file using pvali index
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
View source: R/query.r
View source: R/pval_index.r
query_pval_sqlite3 R Documentation
Query pval from file using pvali index
Description
See create_pvali_index
See create_pvali_index
Usage
query_pval_sqlite3(pval, vcffile, id = NULL, pvali)
query_pval_sqlite3(pval, vcffile, id = NULL, pvali)
Arguments
pval
pval threshold
vcffile
Path to .vcf.gz GWAS summary data file
id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter
pvali
Path to pval index file
Value
vcf object
vcf object
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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View source: R/query.r View source: R/pval_index.r
| query_pval_sqlite3 | R Documentation |
Query pval from file using pvali index
Description
See create_pvali_index
See create_pvali_index
Usage
query_pval_sqlite3(pval, vcffile, id = NULL, pvali)
query_pval_sqlite3(pval, vcffile, id = NULL, pvali)
Arguments
pval |
pval threshold |
vcffile |
Path to .vcf.gz GWAS summary data file |
id |
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter |
pvali |
Path to pval index file |
Value
vcf object
vcf object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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