query_chrompos_bcftools: Query chromosome and position using bcftools
In MRCIEU/gwasvcf: Tools for Dealing with GWAS Summary Data in VCF Format
query_chrompos_bcftools R Documentation
Query chromosome and position using bcftools
Description
Query chromosome and position using bcftools
Usage
query_chrompos_bcftools(chrompos, vcffile, id = NULL)
Arguments
chrompos
Either vector of chromosome and position ranges e.g. "1:1000" or "1:1000-2000", or data frame with columns chrom, start, end.
vcffile
Path to .vcf.gz GWAS summary data file
id
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter
Value
vcf object
MRCIEU/gwasvcf documentation built on Sept. 11, 2023, 7:50 p.m.
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| query_chrompos_bcftools | R Documentation |
Query chromosome and position using bcftools
Description
Query chromosome and position using bcftools
Usage
query_chrompos_bcftools(chrompos, vcffile, id = NULL)
Arguments
chrompos |
Either vector of chromosome and position ranges e.g. "1:1000" or "1:1000-2000", or data frame with columns |
vcffile |
Path to .vcf.gz GWAS summary data file |
id |
If multiple GWAS datasets in the vcf file, the name (sample ID) from which to perform the filter |
Value
vcf object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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