Man pages for MRCIEU/ieugwasr
R interface to the IEU GWAS database API

api_queryWrapper for sending queries and payloads to API
api_statusMR-Base server status
associationsQuery specific variants from specific GWAS
check_access_tokenCheck if authentication has been made
get_access_tokenGet access token for OAuth2 access to MR Base
get_query_contentParse out json response from httr object
gwasinfoGet list of studies with available GWAS summary statistics...
ld_clumpPerform LD clumping on SNP data
ld_clump_apiPerform clumping on the chosen variants using through API
ld_clump_localWrapper for clump function using local plink binary and ld...
ld_matrixGet LD matrix for list of variants
ld_matrix_localGet LD matrix using local plink binary and reference dataset
legacy_idsConvert current IDs to legacy IDs
logging_infoDetails of how access token logs are used
phewasPerform fast phewas of a specific variants against all...
pipePipe operator
revoke_access_tokenRevoke access token for MR Base
select_apiToggle API address between development and release
tophitsObtain top hits from a GWAS dataset
variants_chrposObtain information about chr pos and surrounding region
variants_geneObtain variants around a gene
variants_rsidObtain information about rsid
variants_to_rsidConvert mixed array of rsid and chrpos to list of rsid
MRCIEU/ieugwasr documentation built on Dec. 3, 2019, 4:49 p.m.