ld_reflookup: Check which rsids are present in a remote LD reference panel

View source: R/ld_clump.R

ld_reflookupR Documentation

Check which rsids are present in a remote LD reference panel

Description

Provide a list of rsids that you may want to perform LD operations on to check if they are present in the LD reference panel. If they are not then some functions e.g. ld_clump will exclude them from the analysis, so you may want to consider how to handle those variants in your data.

Usage

ld_reflookup(rsid, pop = "EUR")

Arguments

rsid

Array of rsids to check

pop

Super-population to use as reference panel. Default = "EUR". Options are "EUR", "SAS", "EAS", "AFR", "AMR"

Value

Array of rsids that are present in the LD reference panel


MRCIEU/ieugwasr documentation built on June 22, 2022, 3:49 a.m.