variants_chrpos: Obtain information about chr pos and surrounding region
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
variants_chrpos R Documentation
Obtain information about chr pos and surrounding region
Description
For a list of chromosome and positions, finds all variants within a given radius
Usage
variants_chrpos(chrpos, radius = 0, opengwas_jwt = get_opengwas_jwt())
Arguments
chrpos
list of <chr>:<pos> in build 37,
e.g. c("3:46414943", "3:122991235"). Also allows ranges e.g. "7:105561135-105563135"
radius
Radius around each chrpos, default = 0
opengwas_jwt
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
Value
Data frame
MRCIEU/ieugwasr documentation built on Aug. 22, 2024, 8:44 p.m.
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| variants_chrpos | R Documentation |
Obtain information about chr pos and surrounding region
Description
For a list of chromosome and positions, finds all variants within a given radius
Usage
variants_chrpos(chrpos, radius = 0, opengwas_jwt = get_opengwas_jwt())
Arguments
chrpos |
list of |
radius |
Radius around each chrpos, default = |
opengwas_jwt |
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT. |
Value
Data frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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