afl2_list: Retrieve a allele frequency and LD scores for pre-defined...
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
afl2_list R Documentation
Retrieve a allele frequency and LD scores for pre-defined lists of variants
Description
Data frame includes 1000 genomes metadata including sample sizes,
allele frequency and LD score, separated by 5 super populations
(EUR = European, AFR = African, EAS = East Asian, AMR = Admixed American,
SAS = South Asian)
Usage
afl2_list(variantlist = c("reduced", "hapmap3")[1])
Arguments
variantlist
Choose pre-defined list. reduced = ~20k SNPs that are
common in all super populations (default). hapmap3 = ~1.3 million hm3 SNPs
Value
Data frame containing ancestry specific LD scores and allele frequencies for each variant
MRCIEU/ieugwasr documentation built on April 15, 2024, 4:19 p.m.
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| afl2_list | R Documentation |
Retrieve a allele frequency and LD scores for pre-defined lists of variants
Description
Data frame includes 1000 genomes metadata including sample sizes, allele frequency and LD score, separated by 5 super populations (EUR = European, AFR = African, EAS = East Asian, AMR = Admixed American, SAS = South Asian)
Usage
afl2_list(variantlist = c("reduced", "hapmap3")[1])
Arguments
variantlist |
Choose pre-defined list. reduced = ~20k SNPs that are common in all super populations (default). hapmap3 = ~1.3 million hm3 SNPs |
Value
Data frame containing ancestry specific LD scores and allele frequencies for each variant
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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