afl2_list: Retrieve a allele frequency and LD scores for pre-defined...

View source: R/afl2.r

afl2_listR Documentation

Retrieve a allele frequency and LD scores for pre-defined lists of variants


Data frame includes 1000 genomes metadata including sample sizes, allele frequency and LD score, separated by 5 super populations (EUR = European, AFR = African, EAS = East Asian, AMR = Admixed American, SAS = South Asian)


afl2_list(variantlist = c("reduced", "hapmap3")[1])



Choose pre-defined list. reduced = ~20k SNPs that are common in all super populations (default). hapmap3 = ~1.3 million hm3 SNPs


Data frame containing ancestry specific LD scores and allele frequencies for each variant

MRCIEU/ieugwasr documentation built on April 15, 2024, 4:19 p.m.