afl2_rsid: Look up allele frequencies and LD scores for 1000 genomes...

In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API

Look up allele frequencies and LD scores for 1000 genomes populations by rsid

Description

Look up allele frequencies and LD scores for 1000 genomes populations by rsid

Usage

afl2_rsid(rsid, reference = "1000g", opengwas_jwt = get_opengwas_jwt())

Arguments

rsid	Vector of rsids
reference	Default="1000g"
opengwas_jwt	Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

Data frame containing ancestry specific LD scores and allele frequencies for each variant

MRCIEU/ieugwasr documentation built on April 11, 2025, 11:51 p.m.