afl2_rsid: Look up allele frequencies and LD scores for 1000 genomes...
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
afl2_rsid R Documentation
Look up allele frequencies and LD scores for 1000 genomes populations by rsid
Description
Look up allele frequencies and LD scores for 1000 genomes populations by rsid
Usage
afl2_rsid(rsid, reference = "1000g", opengwas_jwt = get_opengwas_jwt())
Arguments
rsid
Vector of rsids
reference
Default="1000g"
opengwas_jwt
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
Value
Data frame containing ancestry specific LD scores and allele frequencies for each variant
MRCIEU/ieugwasr documentation built on Aug. 22, 2024, 8:44 p.m.
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| afl2_rsid | R Documentation |
Look up allele frequencies and LD scores for 1000 genomes populations by rsid
Description
Look up allele frequencies and LD scores for 1000 genomes populations by rsid
Usage
afl2_rsid(rsid, reference = "1000g", opengwas_jwt = get_opengwas_jwt())
Arguments
rsid |
Vector of rsids |
reference |
Default= |
opengwas_jwt |
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT. |
Value
Data frame containing ancestry specific LD scores and allele frequencies for each variant
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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