phewas: Perform fast phewas of a specific variants against all...
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
phewas R Documentation
Perform fast phewas of a specific variants against all available GWAS datasets
Description
This is faster than doing it manually through associations
Usage
phewas(variants, pval = 1e-05, batch = c(), opengwas_jwt = get_opengwas_jwt())
Arguments
variants
Array of variants e.g. c("rs234", "7:105561135-105563135")
pval
p-value threshold. Default = 0.00001
batch
Vector of batch IDs to search across. If c() (default) then returns all batches
opengwas_jwt
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
Value
Dataframe
MRCIEU/ieugwasr documentation built on Aug. 22, 2024, 8:44 p.m.
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| phewas | R Documentation |
Perform fast phewas of a specific variants against all available GWAS datasets
Description
This is faster than doing it manually through associations
Usage
phewas(variants, pval = 1e-05, batch = c(), opengwas_jwt = get_opengwas_jwt())
Arguments
variants |
Array of variants e.g. |
pval |
p-value threshold. Default = |
batch |
Vector of batch IDs to search across. If |
opengwas_jwt |
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT. |
Value
Dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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