variants_gene: Obtain variants around a gene
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
variants_gene R Documentation
Obtain variants around a gene
Description
Provide a gene identified, either Ensembl or Entrez
Usage
variants_gene(gene, radius = 0, opengwas_jwt = get_opengwas_jwt())
Arguments
gene
Vector of genes, either Ensembl or Entrez,
e.g. c("ENSG00000123374", "ENSG00000160791") or 1017
radius
Radius around the gene region to include. Default = 0
opengwas_jwt
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.
Value
data frame with the following columns
MRCIEU/ieugwasr documentation built on Aug. 22, 2024, 8:44 p.m.
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| variants_gene | R Documentation |
Obtain variants around a gene
Description
Provide a gene identified, either Ensembl or Entrez
Usage
variants_gene(gene, radius = 0, opengwas_jwt = get_opengwas_jwt())
Arguments
gene |
Vector of genes, either Ensembl or Entrez,
e.g. |
radius |
Radius around the gene region to include. Default = |
opengwas_jwt |
Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT. |
Value
data frame with the following columns
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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