variants_gene: Obtain variants around a gene

In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API

Obtain variants around a gene

Description

Provide a gene identified, either Ensembl or Entrez

Usage

variants_gene(gene, radius = 0, opengwas_jwt = get_opengwas_jwt())

Arguments

gene	Vector of genes, either Ensembl or Entrez, e.g. c("ENSG00000123374", "ENSG00000160791") or 1017
radius	Radius around the gene region to include. Default = 0
opengwas_jwt	Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

data frame with the following columns

MRCIEU/ieugwasr documentation built on April 25, 2024, 8:32 p.m.