ld_matrix_local: Get LD matrix using local plink binary and reference dataset
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
ld_matrix_local R Documentation
Get LD matrix using local plink binary and reference dataset
Description
Get LD matrix using local plink binary and reference dataset
Usage
ld_matrix_local(variants, bfile, plink_bin, with_alleles = TRUE)
Arguments
variants
List of variants (rsids)
bfile
Path to bed/bim/fam ld reference panel
plink_bin
Specify path to plink binary. Default = NULL.
See https://github.com/explodecomputer/plinkbinr for convenient access to plink binaries
with_alleles
Whether to append the allele names to the SNP names.
Default: TRUE
Value
data frame
MRCIEU/ieugwasr documentation built on June 30, 2024, noon
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| ld_matrix_local | R Documentation |
Get LD matrix using local plink binary and reference dataset
Description
Get LD matrix using local plink binary and reference dataset
Usage
ld_matrix_local(variants, bfile, plink_bin, with_alleles = TRUE)
Arguments
variants |
List of variants (rsids) |
bfile |
Path to bed/bim/fam ld reference panel |
plink_bin |
Specify path to plink binary. Default = |
with_alleles |
Whether to append the allele names to the SNP names.
Default: |
Value
data frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.