ld_matrix_local: Get LD matrix using local plink binary and reference dataset

In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API

Get LD matrix using local plink binary and reference dataset

Description

Get LD matrix using local plink binary and reference dataset

Usage

ld_matrix_local(variants, bfile, plink_bin, with_alleles = TRUE)

Arguments

variants	List of variants (rsids)
bfile	Path to bed/bim/fam ld reference panel
plink_bin	Specify path to plink binary. Default = NULL. See https://github.com/explodecomputer/plinkbinr for convenient access to plink binaries
with_alleles	Whether to append the allele names to the SNP names. Default: TRUE

Value

data frame

MRCIEU/ieugwasr documentation built on Aug. 22, 2024, 8:44 p.m.