infer_ancestry: Infer ancestry of GWAS dataset by matching against 1000...
In MRCIEU/ieugwasr: Interface to the 'OpenGWAS' Database API
infer_ancestry R Documentation
Infer ancestry of GWAS dataset by matching against 1000 genomes allele frequencies
Description
Uses ~20k SNPs selected for common frequency across 5 major super populations
Usage
infer_ancestry(d, snpinfo = NULL)
Arguments
d
Data frame containing at least rsid and eaf columns.
e.g. output from associations
snpinfo
Output from afl2_list, afl2_rsid or afl2_chrpos.
If NULL then afl2_list() is used by default
Value
data frame ordered by most likely ancestry, each row represents a super population and cor column represents the correlation between the GWAS dataset and the 1000 genomes super population allele frequencies
MRCIEU/ieugwasr documentation built on April 20, 2024, 11:31 p.m.
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| infer_ancestry | R Documentation |
Infer ancestry of GWAS dataset by matching against 1000 genomes allele frequencies
Description
Uses ~20k SNPs selected for common frequency across 5 major super populations
Usage
infer_ancestry(d, snpinfo = NULL)
Arguments
d |
Data frame containing at least |
snpinfo |
Output from |
Value
data frame ordered by most likely ancestry, each row represents a super population and cor column represents the correlation between the GWAS dataset and the 1000 genomes super population allele frequencies
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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