utilsDeStrand: Utility: Split Genomic Ranges by strand
In MalteThodberg/CAGEfightR: Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Description
Usage
Arguments
Value
See Also
Examples
Description
Utility function that attemps to split genomic ranges by strand with split(object, strand(object))
Usage
1
utilsDeStrand(object)
Arguments
object
Any object with a split and strand method, e.g. GRanges/GPos
Value
Object split by strand, e.g. GRangesList.
See Also
Other Utility functions:
utilsAggregateRows(),
utilsScoreOverlaps(),
utilsSimplifyTxDb()
Examples
1
2
3
4
5
6
gp <- GPos(seqnames=Rle(c("chr1", "chr2", "chr1"), c(10, 6, 4)),
pos=c(44:53, 5:10, 2:5),
strand=c(rep("+", 10), rep("-", 10)))
gr <- as(gp, "GRanges")
utilsDeStrand(gp)
utilsDeStrand(gr)
MalteThodberg/CAGEfightR documentation built on Sept. 11, 2021, 4:42 a.m.
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Description Usage Arguments Value See Also Examples
Description
Utility function that attemps to split genomic ranges by strand with split(object, strand(object))
Usage
1 | utilsDeStrand(object)
|
Arguments
object |
Any object with a split and strand method, e.g. GRanges/GPos |
Value
Object split by strand, e.g. GRangesList.
See Also
Other Utility functions:
utilsAggregateRows(),
utilsScoreOverlaps(),
utilsSimplifyTxDb()
Examples
1 2 3 4 5 6 | gp <- GPos(seqnames=Rle(c("chr1", "chr2", "chr1"), c(10, 6, 4)),
pos=c(44:53, 5:10, 2:5),
strand=c(rep("+", 10), rep("-", 10)))
gr <- as(gp, "GRanges")
utilsDeStrand(gp)
utilsDeStrand(gr)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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