Files in Mercedeh66/mirTarRnaSeq
mirTarRnaSeq
.Rbuildignore
.github/.gitignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS
R/as.character.formula.R
R/combiner.R
R/corMirnaRna.R
R/corMirnaRnaMiranda.R
R/data.R
R/drawCorPlot.R
R/drawInterPlots.R
R/fdrSig.R
R/finInterResult.R
R/geneVari.R
R/getInputSpecies.R
R/importMirandaFile.R
R/makeFormulaRightSide.R
R/miRanComp.R
R/miRandaIntersect.R
R/mirRnaDensityCor.R
R/mirRnaDensityInter.R
R/mirRnaHeatmap.R
R/mirRnaHeatmapDiff.R
R/mirandaIntersectInter.R
R/modelRsquared.R
R/modelsFilter.R
R/models_gaussian.R
R/models_multi.R
R/models_nb.R
R/models_poisson.R
R/models_run.R
R/models_utils.R
R/models_zeroinfl.R
R/one2OneRnaMiRNA.R
R/one2manySponge.R
R/plotFit.R
R/plotResiduals.R
R/plotTerms.R
R/rsquRes.R
R/runAllMirnaModels.R
R/runModels.R
R/sampCorRnaMirna.R
R/sponge.R
R/threshSig.R
R/threshSigInter.R
R/twoTimePoint.R
R/twoTimePointSamp.R
R/tzTrans.R
R/zzz.R
README.md
conda.yml
data-raw/DATASET.R
data-raw/internal/mirna_fc.txt
data-raw/internal/mrna_fc.txt
data-raw/makeTest.R
data-raw/test/EBV_mRNA.txt
data-raw/test/EBV_miRNA.txt
data-raw/test/mRNA0_2.txt
data-raw/test/mRNA0_5.txt
data-raw/test/mRNA2_5.txt
data-raw/test/miRNA0_2.txt
data-raw/test/miRNA0_5.txt
data-raw/test/miRNA2_5.txt
data/Combine.rda
data/corr_0.rda
data/final_results.rda
data/geneVariant.rda
data/inter0.rda
data/mRNA.rda
data/mRNA0_2.rda
data/mRNA0_5.rda
data/mRNA2_5.rda
data/mRNA_fc.rda
data/mRNA_fc2.rda
data/miRNA.rda
data/miRNA0_2.rda
data/miRNA0_5.rda
data/miRNA2_5.rda
data/miRNA_fc.rda
data/miRNA_fc2.rda
data/miRanda.rda
data/miRandaM.rda
data/outs.rda
data/outs2.rda
data/results.rda
data/sig_InterR.rda
data/sig_corrs.rda
data/some_model.rda
inst/extdata/miRandaPrepFiles/Epstein_Barr_miRanda.txt.gz
inst/extdata/test/EBV_mRNA.txt.gz
inst/extdata/test/EBV_miRNA.txt.gz
inst/extdata/test/mRNA0_2.txt.gz
inst/extdata/test/mRNA0_5.txt.gz
inst/extdata/test/mRNA2_5.txt.gz
inst/extdata/test/miRNA0_2.txt.gz
inst/extdata/test/miRNA0_5.txt.gz
inst/extdata/test/miRNA2_5.txt.gz
man/Combine.Rd
man/canonicalModel_.Rd
man/combiner.Rd
man/corMirnaRna.Rd
man/corMirnaRnaMiranda.Rd
man/corr_0.Rd
man/downloadMirandaFile.Rd
man/drawCorPlot.Rd
man/drawInterPlots.Rd
man/fdrSig.Rd
man/figures/logo.png
man/finInterResult.Rd
man/final_results.Rd
man/geneVari.Rd
man/geneVariant.Rd
man/getInputSpecies.Rd
man/glm_gaussian.Rd
man/glm_multi.Rd
man/glm_nb.Rd
man/glm_poisson.Rd
man/glm_zeroinfl.Rd
man/glm_zeroinfl_negbin.Rd
man/glm_zeroinfl_poisson.Rd
man/importMirandaFile.Rd
man/inter0.Rd
man/mRNA.Rd
man/mRNA0_2.Rd
man/mRNA0_5.Rd
man/mRNA2_5.Rd
man/mRNA_fc.Rd
man/mRNA_fc2.Rd
man/makeFormulaRightSide.Rd
man/miRNA.Rd
man/miRNA0_2.Rd
man/miRNA0_5.Rd
man/miRNA2_5.Rd
man/miRNA_fc.Rd
man/miRNA_fc2.Rd
man/miRanComp.Rd
man/miRanda.Rd
man/miRandaIntersect.Rd
man/miRandaM.Rd
man/mirRnaDensityCor.Rd
man/mirRnaDensityInter.Rd
man/mirRnaHeatmap.Rd
man/mirRnaHeatmapDiff.Rd
man/mirandaIntersectInter.Rd
man/miranda_sponge_predict.Rd
man/modelAIC.Rd
man/modelCoefficients.Rd
man/modelData.Rd
man/modelModelName.Rd
man/modelModelPvalue.Rd
man/modelTermPvalues.Rd
man/modelsFilter.Rd
man/one2OneRnaMiRNA.Rd
man/one2manySponge.Rd
man/outs.Rd
man/outs2.Rd
man/plotFit.Rd
man/plotResiduals.Rd
man/plotTerms.Rd
man/results.Rd
man/runAllMirnaModels.Rd
man/runModel.Rd
man/runModels.Rd
man/sampCorRnaMirna.Rd
man/sig_InterR.Rd
man/sig_corrs.Rd
man/some_model.Rd
man/threshSig.Rd
man/threshSigInter.Rd
man/twoTimePoint.Rd
man/twoTimePointSamp.Rd
man/tzTrans.Rd
vignettes/mirTarRnaSeq.Rmd
